About ArQule

ArQule is a biotechnology company engaged in the research and development of next-generation, small-molecule cancer therapeutics. The Company’s targeted, broad-spectrum products and research programs are focused on key biological processes that are central to human cancers. ArQule’s lead product, in Phase 2 and Phase 3 clinical development, is tivantinib (ARQ 197), an oral, selective inhibitor of the c-MET receptor tyrosine kinase. The Company’s pipeline consists of ARQ 621, designed to inhibit the Eg5 kinesin motor protein, and ARQ 736, designed to inhibit the RAF kinases. ArQule’s current discovery efforts, which are based on the ArQule Kinase Inhibitor Platform (AKIP™), are focused on the identification of novel kinase inhibitors that are potent, selective and do not compete with ATP (adenosine triphosphate) for binding to the kinase.

This press release contains forward-looking statements regarding the Company’s clinical trials with tivantinib (ARQ 197) and other candidate compounds in earlier stages of development, as well as forward-looking statements related to the Company’s financial guidance for 2012 (including estimates of net use of cash, revenues, net loss, net loss per share and cash and marketable securities at the end of 2012) and its agreements with Daiichi Sankyo Co., Ltd. and Kyowa Hakko Kirin Co., Ltd. These statements are based on the Company’s current beliefs and expectations, and are subject to risks and uncertainties that could cause actual results to differ materially. Positive information about pre-clinical and early stage clinical trial results does not ensure that later stage or larger scale clinical trials will be successful. For example, tivantinib, ARQ 092 (an AKT inhibitor), ARQ 621 (an Eg5 inhibitor), ARQ 736 (a RAF kinases inhibitor) and ARQ 087 (an FGFR inhibitor) may not demonstrate promising therapeutic effects; in addition, they may not demonstrate appropriate safety profiles in current or later stage or larger scale clinical trials as a result of known or as yet unanticipated side effects. The results achieved in later stage trials may not be sufficient to meet applicable regulatory standards or to justify further development. Problems or delays may arise during clinical trials or in the course of developing, testing or manufacturing these compounds that could lead the Company or its partners to discontinue development. Even if later stage clinical trials are successful, unexpected concerns may arise from analysis of data or from additional data. Obstacles may arise or issues may be identified in connection with review of clinical data with regulatory authorities, and regulatory authorities may disagree with the Company’s view of the data or require additional data or information or additional studies. In addition, the planned timing of initiation and completion of clinical trials for tivantinib is subject to the ability of the Company or Daiichi Sankyo, its partner, and Kyowa Hakko Kirin, a licensee of tivantinib, to enroll patients, enter into agreements with clinical trial sites and investigators, and overcome other technical hurdles and issues related to the conduct of the trials for which each of them is responsible that may not be resolved. Drug development involves a high degree of risk. Only a small number of research and development programs result in the commercialization of a product. Positive pre-clinical data may not be supported in later stages of development. Furthermore, ArQule may not have the financial or human resources to successfully pursue drug discovery in the future. Moreover, Daiichi Sankyo has certain rights to unilaterally terminate the tivantinib license, co-development and co-commercialization agreement. If it were to do so, the Company might not be able to complete development and commercialization of tivantinib on its own. For more detailed information on the risks and uncertainties associated with the Company’s drug development and other activities, see the Company’s periodic reports filed with the Securities and Exchange Commission. The Company does not undertake any obligation to publicly update any forward-looking statements.

ArQule, Inc.

Condensed Consolidated Statements of Operations and Comprehensive Loss (Unaudited)
Three Months Ended September 30, Nine Months Ended September 30,
2012 2011 2012 2011
(In Thousands, Except Per Share Data)
Research and development revenue $ 10,944 $ 11,954 $ 31,271 $ 30,806
Costs and expenses:
Research and development 8,146 11,108 26,720 35,337
General and administrative   3,387   3,127   10,500   10,222
Total costs and expenses   11,533   14,235   37,220   45,559
Loss from operations (589 ) (2,281 ) (5,949 ) (14,753 )
Interest income 150 77 294 244
Interest expense (7 ) (6 ) (19 ) (18 )
Other income (expense) 15 (50 ) 98 (3 )
Net loss   (431 )   (2,260 )   (5,576 )   (14,530 )
Unrealized gain (loss) on marketable securities   273   (144 )   166   (80 )
Comprehensive loss $ (158 ) $ (2,404 ) $ (5,410 ) $ (14,610 )
Basic and diluted net loss per share:
Net loss per share $ (0.01 ) $ (0.04 ) $ (0.09 ) $ (0.28 )
Weighted average basic and diluted common shares outstanding   62,224   53,534  

Balance sheet data (in thousands):   September 30,

  December 31, 2011
Cash, equivalents and marketable securities- short term $ 82,760 $ 68,168
Marketable securities- long term 57,398 40,475
$ 140,158 $ 108,643
Total assets $ 144,675 $ 117,051
Notes payable $ 1,700 $ 1,700
Stockholders’ equity $ 85,371 $ 29,729

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